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MouseBytes, an open-access high-throughput pipeline and database for rodent touchscreen-based cognitive assessment

by Beraldo, Flavio H , Kolisnyk, Benjamin , Wasserman, David I , Strother, Stephen S , Fodor, Chris , Prado, Vania F , Memar, Sara , Gee, Tom , Al-Onaizi, Mohammed A , Lee, Wai-Jane V , Saksida, Lisa M , Mels, Justin , Cowan, Matthew F , Winters, Boyer D , Bartha, Robert , Liang, Shuai , Palmer, Daniel , Masood, Talal S , Prado, Marco AM , Creighton, Samantha D , Bussey, Timothy J

in Age / Alzheimer Disease / Alzheimer's disease / amyloid-beta plaques / Animal models / Animals / Automation / Behavior, Animal / Choice Behavior / cognition / Cognition - physiology / Cognitive ability / Databases, Factual / Disease Models, Animal / Female / high-throughput screening / Laboratories / Laboratory Animal Science - instrumentation / Laboratory Animal Science - methods / Learning - physiology / Male / Memory - physiology / Mice / Neurodegenerative diseases / Neuropsychological Tests / Neuroscience / Open access / open-access database / Reproducibility of Results / Rodentia - genetics / Rodents / Software / Tools and Resources / touchscreen

2019

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MouseBytes, an open-access high-throughput pipeline and database for rodent touchscreen-based cognitive assessment

2019

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MouseBytes, an open-access high-throughput pipeline and database for rodent touchscreen-based cognitive assessment

2019

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Journal Article

MouseBytes, an open-access high-throughput pipeline and database for rodent touchscreen-based cognitive assessment

Beraldo, Flavio H,

Kolisnyk, Benjamin,

Wasserman, David I,

Strother, Stephen S,

Fodor, Chris,

Prado, Vania F,

Memar, Sara,

Gee, Tom,

Al-Onaizi, Mohammed A,

Lee, Wai-Jane V,

Saksida, Lisa M,

Mels, Justin,

Cowan, Matthew F,

Winters, Boyer D,

Bartha, Robert,

Liang, Shuai,

Palmer, Daniel,

Masood, Talal S,

Prado, Marco AM,

Creighton, Samantha D,

Bussey, Timothy J

2019

Overview

Open Science has changed research by making data accessible and shareable, contributing to replicability to accelerate and disseminate knowledge. However, for rodent cognitive studies the availability of tools to share and disseminate data is scarce. Automated touchscreen-based tests enable systematic cognitive assessment with easily standardised outputs that can facilitate data dissemination. Here we present an integration of touchscreen cognitive testing with an open-access database public repository (mousebytes.ca), as well as a Web platform for knowledge dissemination (https://touchscreencognition.org). We complement these resources with the largest dataset of age-dependent high-level cognitive assessment of mouse models of Alzheimer’s disease, expanding knowledge of affected cognitive domains from male and female mice of three strains. We envision that these new platforms will enhance sharing of protocols, data availability and transparency, allowing meta-analysis and reuse of mouse cognitive data to increase the replicability/reproducibility of datasets.

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Publisher

eLife Sciences Publications Ltd,eLife Sciences Publications, Ltd

Subject

Age

/ Alzheimer Disease

/ Alzheimer's disease

/ amyloid-beta plaques

/ Animal models

/ Animals

/ Automation