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The selective pressures on the microbial community in a metal-contaminated aquifer
by
Liu, Hualan
, Aaring, Alex
, Price, Morgan N.
, Chakraborty, Romy
, Carlson, Hans K.
, Deutschbauer, Adam M.
, Kuehl, Jennifer V.
, Arkin, Adam P.
, Callaghan, Mark
in
38
/ 42
/ 45
/ 45/23
/ 631/158/855
/ 64
/ 704/172/169
/ Abundance
/ Aluminum
/ Aquifers
/ BASIC BIOLOGICAL SCIENCES
/ Biodegradation, Environmental
/ Biomedical and Life Sciences
/ Carbon dioxide
/ Cobalt
/ Contamination
/ Ecology
/ Evolutionary Biology
/ Gammaproteobacteria - classification
/ Gammaproteobacteria - growth & development
/ Gammaproteobacteria - isolation & purification
/ Gammaproteobacteria - metabolism
/ Groundwater
/ Groundwater - chemistry
/ Groundwater - microbiology
/ Ions
/ Life Sciences
/ Manganese
/ Metals - metabolism
/ Metals - toxicity
/ Microbial activity
/ Microbial contamination
/ Microbial Ecology
/ Microbial Genetics and Genomics
/ Microbiology
/ Microbiomes
/ Microbiota
/ Microorganisms
/ Mixtures
/ Nitrates - analysis
/ pH effects
/ Pseudomonas
/ Pseudomonas - classification
/ Pseudomonas - growth & development
/ Pseudomonas - isolation & purification
/ Pseudomonas - metabolism
/ Rhodanobacter
/ Uranium
/ Uranium - analysis
/ Wells
/ Zinc
2019
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The selective pressures on the microbial community in a metal-contaminated aquifer
by
Liu, Hualan
, Aaring, Alex
, Price, Morgan N.
, Chakraborty, Romy
, Carlson, Hans K.
, Deutschbauer, Adam M.
, Kuehl, Jennifer V.
, Arkin, Adam P.
, Callaghan, Mark
in
38
/ 42
/ 45
/ 45/23
/ 631/158/855
/ 64
/ 704/172/169
/ Abundance
/ Aluminum
/ Aquifers
/ BASIC BIOLOGICAL SCIENCES
/ Biodegradation, Environmental
/ Biomedical and Life Sciences
/ Carbon dioxide
/ Cobalt
/ Contamination
/ Ecology
/ Evolutionary Biology
/ Gammaproteobacteria - classification
/ Gammaproteobacteria - growth & development
/ Gammaproteobacteria - isolation & purification
/ Gammaproteobacteria - metabolism
/ Groundwater
/ Groundwater - chemistry
/ Groundwater - microbiology
/ Ions
/ Life Sciences
/ Manganese
/ Metals - metabolism
/ Metals - toxicity
/ Microbial activity
/ Microbial contamination
/ Microbial Ecology
/ Microbial Genetics and Genomics
/ Microbiology
/ Microbiomes
/ Microbiota
/ Microorganisms
/ Mixtures
/ Nitrates - analysis
/ pH effects
/ Pseudomonas
/ Pseudomonas - classification
/ Pseudomonas - growth & development
/ Pseudomonas - isolation & purification
/ Pseudomonas - metabolism
/ Rhodanobacter
/ Uranium
/ Uranium - analysis
/ Wells
/ Zinc
2019
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The selective pressures on the microbial community in a metal-contaminated aquifer
by
Liu, Hualan
, Aaring, Alex
, Price, Morgan N.
, Chakraborty, Romy
, Carlson, Hans K.
, Deutschbauer, Adam M.
, Kuehl, Jennifer V.
, Arkin, Adam P.
, Callaghan, Mark
in
38
/ 42
/ 45
/ 45/23
/ 631/158/855
/ 64
/ 704/172/169
/ Abundance
/ Aluminum
/ Aquifers
/ BASIC BIOLOGICAL SCIENCES
/ Biodegradation, Environmental
/ Biomedical and Life Sciences
/ Carbon dioxide
/ Cobalt
/ Contamination
/ Ecology
/ Evolutionary Biology
/ Gammaproteobacteria - classification
/ Gammaproteobacteria - growth & development
/ Gammaproteobacteria - isolation & purification
/ Gammaproteobacteria - metabolism
/ Groundwater
/ Groundwater - chemistry
/ Groundwater - microbiology
/ Ions
/ Life Sciences
/ Manganese
/ Metals - metabolism
/ Metals - toxicity
/ Microbial activity
/ Microbial contamination
/ Microbial Ecology
/ Microbial Genetics and Genomics
/ Microbiology
/ Microbiomes
/ Microbiota
/ Microorganisms
/ Mixtures
/ Nitrates - analysis
/ pH effects
/ Pseudomonas
/ Pseudomonas - classification
/ Pseudomonas - growth & development
/ Pseudomonas - isolation & purification
/ Pseudomonas - metabolism
/ Rhodanobacter
/ Uranium
/ Uranium - analysis
/ Wells
/ Zinc
2019
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The selective pressures on the microbial community in a metal-contaminated aquifer
Journal Article
The selective pressures on the microbial community in a metal-contaminated aquifer
2019
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Overview
In many environments, toxic compounds restrict which microorganisms persist. However, in complex mixtures of inhibitory compounds, it is challenging to determine which specific compounds cause changes in abundance and prevent some microorganisms from growing. We focused on a contaminated aquifer in Oak Ridge, Tennessee, USA that has large gradients of pH and widely varying concentrations of uranium, nitrate, and many other inorganic ions. In the most contaminated wells, the microbial community is enriched in the
Rhodanobacter
genus.
Rhodanobacter
abundance is positively correlated with low pH and high concentrations of uranium and 13 other ions and we sought to determine which of these ions are selective pressures that favor the growth of
Rhodanobacter
over other taxa. Of these ions, low pH and high UO
2
2+
, Mn
2+
, Al
3+
, Cd
2+
, Zn
2+
, Co
2+
, and Ni
2+
are both (a) selectively inhibitory of a
Pseudomonas
isolate from an uncontaminated well vs. a
Rhodanobacter
isolate from a contaminated well, and (b) reach toxic concentrations (for the
Pseudomonas
isolate) in the
Rhodanobacter
-dominated wells. We used mixtures of ions to simulate the groundwater conditions in the most contaminated wells and verified that few isolates aside from
Rhodanobacter
can tolerate these eight ions. These results clarify which ions are likely causal factors that impact the microbial community at this field site and are not merely correlated with taxonomic shifts. Furthermore, our general high-throughput approach can be applied to other environments, isolates, and conditions to systematically help identify selective pressures on microbial communities.
Publisher
Nature Publishing Group UK,Oxford University Press,Nature Publishing Group
Subject
/ 42
/ 45
/ 45/23
/ 64
/ Aluminum
/ Aquifers
/ Biodegradation, Environmental
/ Biomedical and Life Sciences
/ Cobalt
/ Ecology
/ Gammaproteobacteria - classification
/ Gammaproteobacteria - growth & development
/ Gammaproteobacteria - isolation & purification
/ Gammaproteobacteria - metabolism
/ Ions
/ Microbial Genetics and Genomics
/ Mixtures
/ Pseudomonas - classification
/ Pseudomonas - growth & development
/ Pseudomonas - isolation & purification
/ Uranium
/ Wells
/ Zinc
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