Journal Article

Microbial Communities Involved in Methane, Sulfur, and Nitrogen Cycling in the Sediments of the Barents Sea

Klyuvitkin, Alexey A., Savvichev, Alexander S., Ravin, Nikolai V., Kadnikov, Vitaly V., Pimenov, Nikolai V., Beletsky, Alexey V., Begmatov, Shahjahon, Rusanov, Igor I., Novichkova, Ekaterina A., Mardanov, Andrey V.

2021

Overview

A combination of physicochemical and radiotracer analysis, high-throughput sequencing of the 16S rRNA, and particulate methane monooxygenase subunit A (pmoA) genes was used to link a microbial community profile with methane, sulfur, and nitrogen cycling processes. The objects of study were surface sediments sampled at five stations in the northern part of the Barents Sea. The methane content in the upper layers (0–5 cm) ranged from 0.2 to 2.4 µM and increased with depth (16–19 cm) to 9.5 µM. The rate of methane oxidation in the oxic upper layers varied from 2 to 23 nmol CH4 L−1 day−1 and decreased to 0.3 nmol L−1 day−1 in the anoxic zone at a depth of 16–19 cm. Sulfate reduction rates were much higher, from 0.3 to 2.8 µmol L−1 day−1. In the surface sediments, ammonia-oxidizing Nitrosopumilaceae were abundant; the subsequent oxidation of nitrite to nitrate can be carried out by Nitrospira sp. Aerobic methane oxidation could be performed by uncultured deep-sea cluster 3 of gamma-proteobacterial methanotrophs. Undetectable low levels of methanogenesis were consistent with a near complete absence of methanogens. Anaerobic methane oxidation in the deeper sediments was likely performed by ANME-2a-2b and ANME-2c archaea in consortium with sulfate-reducing Desulfobacterota. Sulfide can be oxidized by nitrate-reducing Sulfurovum sp. Thus, the sulfur cycle was linked with the anaerobic oxidation of methane and the nitrogen cycle, which included the oxidation of ammonium to nitrate in the oxic zone and denitrification coupled to the oxidation of sulfide in the deeper sediments. Methane concentrations and rates of microbial biogeochemical processes in sediments in the northern part of the Barents Sea were noticeably higher than in oligotrophic areas of the Arctic Ocean, indicating that an increase in methane concentration significantly activates microbial processes.

• Publisher: MDPI AG,MDPI
• Subject: Alkalinity / Ammonia / Ammonium / Archaea / arctic / Arctic Ocean / Barents Sea / Biogeochemistry / Carbon / Cold / Community involvement / Cycles / Deep sea / Denitrification / Ecosystems / Gases / Laboratories / marine sediments / Methane / methane cycle / Methane monooxygenase / methane monooxygenase (particulate) / methane production / Methanogenesis / Methanogenic bacteria / methanogens / Methanotrophic bacteria / methanotrophs / Microbial activity / microbial communities / Microbiomes / Microorganisms / Next-generation sequencing / Nitrates / nitrites / Nitrogen / Nitrogen cycle / Oxidation / Radioactive tracers / rRNA 16S / Rubber / Seawater / Sediments / Sulfate reduction / Sulfates / Sulfides / Sulfur / Sulfur cycle