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Genetic and epigenetic intratumor heterogeneity impacts prognosis of lung adenocarcinoma
by
Zhao, Wei
, Wedge, David C.
, Wang, Mingyi
, Sampson, Joshua
, Pesatori, Angela C.
, Shi, Jianxin
, Landi, Maria Teresa
, Zhang, Tongwu
, Hicks, Belynda
, Caporaso, Neil E.
, Jones, Kristine
, Hua, Xing
, Zhu, Bin
, Consonni, Dario
, Song, Lei
in
45
/ 45/23
/ 45/61
/ 631/67/1612
/ 631/67/2329
/ 631/67/69
/ Adenocarcinoma
/ Adenocarcinoma of Lung - genetics
/ Aged
/ Aged, 80 and over
/ Copy number
/ CpG Islands - genetics
/ Deoxyribonucleic acid
/ DNA
/ DNA Copy Number Variations
/ DNA methylation
/ DNA Methylation - genetics
/ Epigenesis, Genetic
/ Epigenetics
/ Evolution, Molecular
/ Female
/ Gene mapping
/ Genes
/ Genetic Heterogeneity
/ Heterogeneity
/ Humanities and Social Sciences
/ Humans
/ Kaplan-Meier Estimate
/ Lung cancer
/ Lung Neoplasms - genetics
/ Male
/ Mapping
/ Middle Aged
/ multidisciplinary
/ Mutation
/ Mutation - genetics
/ Polymorphism, Single Nucleotide - genetics
/ Prognosis
/ Science
/ Science (multidisciplinary)
/ Statistical methods
/ Treatment Outcome
/ Tumor suppressor genes
/ Tumors
2020
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Genetic and epigenetic intratumor heterogeneity impacts prognosis of lung adenocarcinoma
by
Zhao, Wei
, Wedge, David C.
, Wang, Mingyi
, Sampson, Joshua
, Pesatori, Angela C.
, Shi, Jianxin
, Landi, Maria Teresa
, Zhang, Tongwu
, Hicks, Belynda
, Caporaso, Neil E.
, Jones, Kristine
, Hua, Xing
, Zhu, Bin
, Consonni, Dario
, Song, Lei
in
45
/ 45/23
/ 45/61
/ 631/67/1612
/ 631/67/2329
/ 631/67/69
/ Adenocarcinoma
/ Adenocarcinoma of Lung - genetics
/ Aged
/ Aged, 80 and over
/ Copy number
/ CpG Islands - genetics
/ Deoxyribonucleic acid
/ DNA
/ DNA Copy Number Variations
/ DNA methylation
/ DNA Methylation - genetics
/ Epigenesis, Genetic
/ Epigenetics
/ Evolution, Molecular
/ Female
/ Gene mapping
/ Genes
/ Genetic Heterogeneity
/ Heterogeneity
/ Humanities and Social Sciences
/ Humans
/ Kaplan-Meier Estimate
/ Lung cancer
/ Lung Neoplasms - genetics
/ Male
/ Mapping
/ Middle Aged
/ multidisciplinary
/ Mutation
/ Mutation - genetics
/ Polymorphism, Single Nucleotide - genetics
/ Prognosis
/ Science
/ Science (multidisciplinary)
/ Statistical methods
/ Treatment Outcome
/ Tumor suppressor genes
/ Tumors
2020
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Genetic and epigenetic intratumor heterogeneity impacts prognosis of lung adenocarcinoma
by
Zhao, Wei
, Wedge, David C.
, Wang, Mingyi
, Sampson, Joshua
, Pesatori, Angela C.
, Shi, Jianxin
, Landi, Maria Teresa
, Zhang, Tongwu
, Hicks, Belynda
, Caporaso, Neil E.
, Jones, Kristine
, Hua, Xing
, Zhu, Bin
, Consonni, Dario
, Song, Lei
in
45
/ 45/23
/ 45/61
/ 631/67/1612
/ 631/67/2329
/ 631/67/69
/ Adenocarcinoma
/ Adenocarcinoma of Lung - genetics
/ Aged
/ Aged, 80 and over
/ Copy number
/ CpG Islands - genetics
/ Deoxyribonucleic acid
/ DNA
/ DNA Copy Number Variations
/ DNA methylation
/ DNA Methylation - genetics
/ Epigenesis, Genetic
/ Epigenetics
/ Evolution, Molecular
/ Female
/ Gene mapping
/ Genes
/ Genetic Heterogeneity
/ Heterogeneity
/ Humanities and Social Sciences
/ Humans
/ Kaplan-Meier Estimate
/ Lung cancer
/ Lung Neoplasms - genetics
/ Male
/ Mapping
/ Middle Aged
/ multidisciplinary
/ Mutation
/ Mutation - genetics
/ Polymorphism, Single Nucleotide - genetics
/ Prognosis
/ Science
/ Science (multidisciplinary)
/ Statistical methods
/ Treatment Outcome
/ Tumor suppressor genes
/ Tumors
2020
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Genetic and epigenetic intratumor heterogeneity impacts prognosis of lung adenocarcinoma
Journal Article
Genetic and epigenetic intratumor heterogeneity impacts prognosis of lung adenocarcinoma
2020
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Overview
Intratumor heterogeneity (ITH) of genomic alterations may impact prognosis of lung adenocarcinoma (LUAD). Here, we investigate ITH of somatic copy number alterations (SCNAs), DNA methylation, and point mutations in lung cancer driver genes in 292 tumor samples from 84 patients with LUAD. LUAD samples show substantial SCNA and methylation ITH, and clonal architecture analyses present congruent evolutionary trajectories for SCNAs and DNA methylation aberrations. Methylation ITH mapping to gene promoter areas or tumor suppressor genes is low. Moreover, ITH composed of genetic and epigenetic mechanisms altering the same cancer driver genes is shown in several tumors. To quantify ITH for valid statistical association analyses, we develope an average pairwise ITH index (APITH), which does not depend on the number of samples per tumor. Both APITH indexes for SCNAs and methylation aberrations show significant associations with poor prognosis. This study further establishes the important clinical implications of genetic and epigenetic ITH in LUAD.
Many tumors are known to be heterogeneous. Here, the authors examined multiple samples from 84 patients with lung adenocarcinoma and demonstrate that the intratumor heterogeneity of methylation and copy number associates with poor prognosis.
Publisher
Nature Publishing Group UK,Nature Publishing Group,Nature Portfolio
Subject
/ 45/23
/ 45/61
/ Adenocarcinoma of Lung - genetics
/ Aged
/ DNA
/ Female
/ Genes
/ Humanities and Social Sciences
/ Humans
/ Male
/ Mapping
/ Mutation
/ Polymorphism, Single Nucleotide - genetics
/ Science
/ Tumors
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