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Deep learning enables rapid identification of potent DDR1 kinase inhibitors
by
Zhebrak, Alexander
, Polykovskiy, Daniil A.
, Kuznetsov, Maksim D.
, Volkov, Yury
, Veselov, Mark S.
, Aladinskiy, Vladimir A.
, Ivanenkov, Yan A.
, Aliper, Alex
, Zholus, Artem
, Minaeva, Lidiya I.
, Asadulaev, Arip
, Madge, David
, Lee, Lennart H.
, Zhavoronkov, Alex
, Xing, Li
, Zagribelnyy, Bogdan A.
, Aladinskaya, Anastasiya V.
, Terentiev, Victor A.
, Soll, Richard
, Shayakhmetov, Rim R.
, Aspuru-Guzik, Alán
, Guo, Tao
in
631/154/309/2144
/ 631/154/309/606
/ 631/61/338/2248
/ 631/92/606
/ 639/638/630
/ Agriculture
/ Animals
/ Artificial intelligence
/ Bioinformatics
/ Biological activity
/ Biomedical and Life Sciences
/ Biomedical Engineering/Biotechnology
/ Biomedicine
/ Biotechnology
/ Brief Communication
/ Collagen
/ Datasets
/ Deep Learning
/ Design optimization
/ Discoidin Domain Receptor 1 - antagonists & inhibitors
/ Discoidin Domain Receptor 1 - genetics
/ Discoidin Domain Receptor 1 - metabolism
/ Dogs
/ Drug Evaluation, Preclinical - methods
/ Enzyme Inhibitors
/ Fibrosis
/ Humans
/ Inhibitors
/ Kinases
/ Life Sciences
/ Machine learning
/ Mice
/ Microsomes, Liver - metabolism
/ Models, Molecular
/ Molecular Structure
/ Pharmacokinetics
/ Phosphotransferases
/ Physiological aspects
/ Protein Conformation
/ Rats
2019
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Deep learning enables rapid identification of potent DDR1 kinase inhibitors
by
Zhebrak, Alexander
, Polykovskiy, Daniil A.
, Kuznetsov, Maksim D.
, Volkov, Yury
, Veselov, Mark S.
, Aladinskiy, Vladimir A.
, Ivanenkov, Yan A.
, Aliper, Alex
, Zholus, Artem
, Minaeva, Lidiya I.
, Asadulaev, Arip
, Madge, David
, Lee, Lennart H.
, Zhavoronkov, Alex
, Xing, Li
, Zagribelnyy, Bogdan A.
, Aladinskaya, Anastasiya V.
, Terentiev, Victor A.
, Soll, Richard
, Shayakhmetov, Rim R.
, Aspuru-Guzik, Alán
, Guo, Tao
in
631/154/309/2144
/ 631/154/309/606
/ 631/61/338/2248
/ 631/92/606
/ 639/638/630
/ Agriculture
/ Animals
/ Artificial intelligence
/ Bioinformatics
/ Biological activity
/ Biomedical and Life Sciences
/ Biomedical Engineering/Biotechnology
/ Biomedicine
/ Biotechnology
/ Brief Communication
/ Collagen
/ Datasets
/ Deep Learning
/ Design optimization
/ Discoidin Domain Receptor 1 - antagonists & inhibitors
/ Discoidin Domain Receptor 1 - genetics
/ Discoidin Domain Receptor 1 - metabolism
/ Dogs
/ Drug Evaluation, Preclinical - methods
/ Enzyme Inhibitors
/ Fibrosis
/ Humans
/ Inhibitors
/ Kinases
/ Life Sciences
/ Machine learning
/ Mice
/ Microsomes, Liver - metabolism
/ Models, Molecular
/ Molecular Structure
/ Pharmacokinetics
/ Phosphotransferases
/ Physiological aspects
/ Protein Conformation
/ Rats
2019
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Deep learning enables rapid identification of potent DDR1 kinase inhibitors
by
Zhebrak, Alexander
, Polykovskiy, Daniil A.
, Kuznetsov, Maksim D.
, Volkov, Yury
, Veselov, Mark S.
, Aladinskiy, Vladimir A.
, Ivanenkov, Yan A.
, Aliper, Alex
, Zholus, Artem
, Minaeva, Lidiya I.
, Asadulaev, Arip
, Madge, David
, Lee, Lennart H.
, Zhavoronkov, Alex
, Xing, Li
, Zagribelnyy, Bogdan A.
, Aladinskaya, Anastasiya V.
, Terentiev, Victor A.
, Soll, Richard
, Shayakhmetov, Rim R.
, Aspuru-Guzik, Alán
, Guo, Tao
in
631/154/309/2144
/ 631/154/309/606
/ 631/61/338/2248
/ 631/92/606
/ 639/638/630
/ Agriculture
/ Animals
/ Artificial intelligence
/ Bioinformatics
/ Biological activity
/ Biomedical and Life Sciences
/ Biomedical Engineering/Biotechnology
/ Biomedicine
/ Biotechnology
/ Brief Communication
/ Collagen
/ Datasets
/ Deep Learning
/ Design optimization
/ Discoidin Domain Receptor 1 - antagonists & inhibitors
/ Discoidin Domain Receptor 1 - genetics
/ Discoidin Domain Receptor 1 - metabolism
/ Dogs
/ Drug Evaluation, Preclinical - methods
/ Enzyme Inhibitors
/ Fibrosis
/ Humans
/ Inhibitors
/ Kinases
/ Life Sciences
/ Machine learning
/ Mice
/ Microsomes, Liver - metabolism
/ Models, Molecular
/ Molecular Structure
/ Pharmacokinetics
/ Phosphotransferases
/ Physiological aspects
/ Protein Conformation
/ Rats
2019
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Deep learning enables rapid identification of potent DDR1 kinase inhibitors
Journal Article
Deep learning enables rapid identification of potent DDR1 kinase inhibitors
2019
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Overview
We have developed a deep generative model, generative tensorial reinforcement learning (GENTRL), for de novo small-molecule design. GENTRL optimizes synthetic feasibility, novelty, and biological activity. We used GENTRL to discover potent inhibitors of discoidin domain receptor 1 (DDR1), a kinase target implicated in fibrosis and other diseases, in 21 days. Four compounds were active in biochemical assays, and two were validated in cell-based assays. One lead candidate was tested and demonstrated favorable pharmacokinetics in mice.
A machine learning model allows the identification of new small-molecule kinase inhibitors in days.
Publisher
Nature Publishing Group US,Nature Publishing Group
Subject
/ Animals
/ Biomedical and Life Sciences
/ Biomedical Engineering/Biotechnology
/ Collagen
/ Datasets
/ Discoidin Domain Receptor 1 - antagonists & inhibitors
/ Discoidin Domain Receptor 1 - genetics
/ Discoidin Domain Receptor 1 - metabolism
/ Dogs
/ Drug Evaluation, Preclinical - methods
/ Fibrosis
/ Humans
/ Kinases
/ Mice
/ Microsomes, Liver - metabolism
/ Rats
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