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Metagenome of a Versatile Chemolithoautotroph from Expanding Oceanic Dead Zones

by Tortell, Philippe D , Wright, Jody J , Hallam, Steven J , Walsh, David A , Song, Young C , Tringe, Susannah G , Howes, Charles G , Zaikova, Elena

in Animal and plant ecology / Animal, plant and microbial ecology / Animalia / Bacteria / Biological and medical sciences / Biomass / Biomass, British Columbia, Carbon/metabolism, Chemoautotrophic Growth, Ecosystem, Energy Metabolism, Gammaproteobacteria/genetics, Gammaproteobacteria/metabolism, Gammaproteobacteria/physiology, Genes, rRNA, Genome, Bacterial, Metagenome, Molecular Sequence Data, Nitrates/metabolism, Oxidation-Reduction, Oxygen/analysis, Pacific Ocean, Phylogeny, Seasons, Seawater/chemistry, Seawater/microbiology, Sulfur/metabolism, Symbiosis / British Columbia / CARBON / Carbon - metabolism / carbon dioxide fixation / CARBON SEQUESTRATION / Chemoautotrophic Growth / CLAMS / Climate change / Deep sea / DETOXIFICATION / Ecosystem / Energy Metabolism / Environmental changes / EUTROPHICATION / Fundamental and applied biological sciences. Psychology / Gammaproteobacteria - genetics / Gammaproteobacteria - metabolism / Gammaproteobacteria - physiology / GENES / Genes, rRNA / Genome, Bacterial / Genomes / Genomics / GILLS / Global warming / GREENHOUSE EFFECT / GREENHOUSE GASES / Harbors / Inlets / Marine / Marine biology / Metagenome / Metagenomics / Metazoa / microorganisms / Molecular Sequence Data / MUSSELS / NITRATES / Nitrates - metabolism / NITROGEN / Nitrous oxide / Nutrient cycles / NUTRIENTS / oceans / Oxidation / Oxidation-Reduction / OXYGEN / Oxygen - analysis / Pacific Ocean / Phylogeny / PRODUCTIVITY / RESPIRATION / rRNA genes / Sea water ecosystems / Seasons / Seawater - chemistry / Seawater - microbiology / SULFIDES / Sulfur / Sulfur - metabolism / Symbionts / Symbiosis / Synecology / WATER

2009

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Metagenome of a Versatile Chemolithoautotroph from Expanding Oceanic Dead Zones

by Tortell, Philippe D , Wright, Jody J , Hallam, Steven J , Walsh, David A , Song, Young C , Tringe, Susannah G , Howes, Charles G , Zaikova, Elena

2009

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Metagenome of a Versatile Chemolithoautotroph from Expanding Oceanic Dead Zones

by Tortell, Philippe D , Wright, Jody J , Hallam, Steven J , Walsh, David A , Song, Young C , Tringe, Susannah G , Howes, Charles G , Zaikova, Elena

2009

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Journal Article

Metagenome of a Versatile Chemolithoautotroph from Expanding Oceanic Dead Zones

Tortell, Philippe D,

Wright, Jody J,

Hallam, Steven J,

Walsh, David A,

Song, Young C,

Tringe, Susannah G,

Howes, Charles G,

Zaikova, Elena

2009

Overview

Oxygen minimum zones, also known as oceanic \"dead zones,\" are widespread oceanographic features currently expanding because of global warming. Although inhospitable to metazoan life, they support a cryptic microbiota whose metabolic activities affect nutrient and trace gas cycling within the global ocean. Here, we report metagenomic analyses of a ubiquitous and abundant but uncultivated oxygen minimum zone microbe (SUP05) related to chemoautotrophic gill symbionts of deep-sea clams and mussels. The SUP05 metagenome harbors a versatile repertoire of genes mediating autotrophic carbon assimilation, sulfur oxidation, and nitrate respiration responsive to a wide range of water-column redox states. Our analysis provides a genomic foundation for understanding the ecological and biogeochemical role of pelagic SUP05 in oxygen-deficient oceanic waters and its potential sensitivity to environmental changes.

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Publisher

American Association for the Advancement of Science,The American Association for the Advancement of Science

Subject

Animal and plant ecology

/ Animal, plant and microbial ecology

/ Animalia

/ Bacteria

/ Biological and medical sciences

/ Biomass

/ Biomass, British Columbia, Carbon/metabolism, Chemoautotrophic Growth, Ecosystem, Energy Metabolism, Gammaproteobacteria/genetics, Gammaproteobacteria/metabolism, Gammaproteobacteria/physiology, Genes, rRNA, Genome, Bacterial, Metagenome, Molecular Sequence Data, Nitrates/metabolism, Oxidation-Reduction, Oxygen/analysis, Pacific Ocean, Phylogeny, Seasons, Seawater/chemistry, Seawater/microbiology, Sulfur/metabolism, Symbiosis