Journal Article

Conserved cell types with divergent features in human versus mouse cortex

Graybuck, Lucas T., Beller, Allison, Mahfouz, Ahmed, Hodge, Rebecca D., Maltzer, Zoe, Dee, Nick, Shehata, Soraya I., Close, Jennie L., Bertagnolli, Darren, Ding, Song-Lin, Tasic, Bosiljka, Long, Brian, Thomsen, Elliot R., Feng, David, Ko, Andrew L., Fong, Olivia, Levi, Boaz P., Quon, Gerald, Koch, Christof, Penn, Osnat, Garren, Emma, Szafer, Aaron, Sunkin, Susan M., Zeng, Hongkui, Ellenbogen, Richard G., Tieu, Michael, Smith, Kimberly A., Lathia, Kanan, Cobbs, Charles, Bernard, Amy, Somasundaram, Saroja, Ng, Lydia, Barkan, Eliza R., Keshk, Mohamed, McGraw, Medea, Hawrylycz, Michael, Eggermont, Jeroen, Gwinn, Ryder P., Lein, Ed S., Höllt, Thomas, Casper, Tamara, Hirschstein, Daniel, Ojemann, Jeffrey G., Aevermann, Brian, Dalley, Rachel, Jones, Allan R., Nyhus, Julie, Oldre, Aaron, Phillips, John W., Rimorin, Christine, Bakken, Trygve E., Johansen, Nelson, Brouner, Krissy, Parry, Sheana, Scheuermann, Richard H., Nguyen, Thuc Nghi, Goldy, Jeff, Keene, C. Dirk, Yao, Zizhen, Shapovalova, Nadiya V., Miller, Jeremy A., Yuste, Rafael, Reynolds, Shannon, Lelieveldt, Boudewijn

2019

Overview

Elucidating the cellular architecture of the human cerebral cortex is central to understanding our cognitive abilities and susceptibility to disease. Here we used single-nucleus RNA-sequencing analysis to perform a comprehensive study of cell types in the middle temporal gyrus of human cortex. We identified a highly diverse set of excitatory and inhibitory neuron types that are mostly sparse, with excitatory types being less layer-restricted than expected. Comparison to similar mouse cortex single-cell RNA-sequencing datasets revealed a surprisingly well-conserved cellular architecture that enables matching of homologous types and predictions of properties of human cell types. Despite this general conservation, we also found extensive differences between homologous human and mouse cell types, including marked alterations in proportions, laminar distributions, gene expression and morphology. These species-specific features emphasize the importance of directly studying human brain. RNA-sequencing analysis of cells in the human cortex enabled identification of diverse cell types, revealing well-conserved architecture and homologous cell types as well as extensive differences when compared with datasets covering the analogous region of the mouse brain.

• Publisher: Nature Publishing Group UK,Nature Publishing Group
• Subject: 13 / 13/31 / 13/51 / 38/32 / 38/39 / 45 / 45/91 / 631/378/340 / 631/378/87 / Adolescent / Adult / Aged / Animal cognition / Animals / Architecture / Astrocytes - classification / Astrocytes - cytology / Bioinformatics / Biological Evolution / Brain / Cerebral cortex / Cerebral Cortex - cytology / Cerebral Cortex - metabolism / Cognitive ability / Comparative analysis / Conservation / Female / Gene expression / Gene sequencing / Genomes / Homology / Human beings / Humanities and Social Sciences / Humans / Male / Man / Mice / Middle Aged / Morphology / multidisciplinary / Neural Inhibition / Neurons / Neurons - classification / Neurons - cytology / Nuclei (cytology) / Ontology / Physiological aspects / Principal Component Analysis / Ribonucleic acid / RNA / RNA-Seq / Science / Science (multidisciplinary) / Single-Cell Analysis / Species Specificity / Temporal gyrus / Temporal lobe / Transcriptome - genetics / Young Adult