Journal Article

Characterization of Synthetic Chikungunya Viruses Based on the Consensus Sequence of Recent E1-226V Isolates

Snijder, Eric J., van Hemert, Martijn J., Cordioli, Paolo, Narayanan, Krishna, Makino, Shinji, Tas, Ali, Martina, Byron E. E., Scholte, Florine E. M.

2013

Overview

Chikungunya virus (CHIKV) is a mosquito-borne alphavirus that re-emerged in 2004 and has caused massive outbreaks in recent years. The lack of a licensed vaccine or treatment options emphasize the need to obtain more insight into the viral life cycle and CHIKV-host interactions. Infectious cDNA clones are important tools for such studies, and for mechanism of action studies on antiviral compounds. Existing CHIKV cDNA clones are based on a single genome from an individual clinical isolate, which is expected to have evolved specific characteristics in response to the host environment, and possibly also during subsequent cell culture passaging. To obtain a virus expected to have the general characteristics of the recent E1-226V CHIKV isolates, we have constructed a new CHIKV full-length cDNA clone, CHIKV LS3, based on the consensus sequence of their aligned genomes. Here we report the characterization of this synthetic virus and a green fluorescent protein-expressing variant (CHIKV LS3-GFP). Their characteristics were compared to those of natural strain ITA07-RA1, which was isolated during the 2007 outbreak in Italy. In cell culture the synthetic viruses displayed phenotypes comparable to the natural isolate, and in a mouse model they caused lethal infections that were indistinguishable from infections with a natural strain. Compared to ITA07-RA1 and clinical isolate NL10/152, the synthetic viruses displayed similar sensitivities to several antiviral compounds. 3-deaza-adenosine was identified as a new inhibitor of CHIKV replication. Cyclosporin A had no effect on CHIKV replication, suggesting that cyclophilins -opposite to what was found for other +RNA viruses- do not play an essential role in CHIKV replication. The characterization of the consensus sequence-based synthetic viruses and their comparison to natural isolates demonstrated that CHIKV LS3 and LS3-GFP are suitable and representative tools to study CHIKV-host interactions, screen for antiviral compounds and unravel their mode of action.

• Publisher: Public Library of Science,Public Library of Science (PLoS)
• Subject: Adenosine / Aedes albopictus / Animals / Antibodies, Monoclonal - immunology / Antiviral activity / Antiviral Agents - pharmacology / Aquatic insects / Biology / Cell culture / Cell Line / Chikungunya virus / Chikungunya virus - drug effects / Chikungunya virus - genetics / Chikungunya virus - isolation & purification / Chikungunya virus - physiology / Cloning / Complementary DNA / Consensus Sequence / Conserved sequence / Cyclosporin A / DNA, Complementary - genetics / Fluorescence / Genetic aspects / Genomes / Green fluorescent protein / Health aspects / Immunology / Infections / Kinetics / Laboratories / Life cycle engineering / Life cycles / Mice / Mode of action / Mosquitoes / Mutation / Outbreaks / Peptidylprolyl isomerase / Physiological aspects / Replication / Ribonucleic acid / RNA / RNA polymerase / RNA viruses / RNA, Double-Stranded - biosynthesis / RNA, Double-Stranded - metabolism / RNA, Viral - biosynthesis / RNA, Viral - metabolism / Studies / Synthetic Biology / True strain / Vector-borne diseases / Vectors (Biology) / Viral Proteins - biosynthesis / Virology / Virus replication / Viruses / Zoonoses