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A metabolic pathway for bile acid dehydroxylation by the gut microbiome
by
Almo, Steven C.
, McFadden, Molly E.
, Varma, Yug
, Guo, Chunjun
, Wang, Min
, Brown, Laura C.
, Fischbach, Michael A.
, Grove, Tyler L.
, Higginbottom, Steven
, Funabashi, Masanori
in
631/326
/ 631/45
/ 82
/ 82/16
/ 82/83
/ Analysis
/ Animals
/ Bile
/ Bile acid metabolism
/ Bile acids
/ Bile Acids and Salts - chemistry
/ Bile Acids and Salts - metabolism
/ Chemical synthesis
/ Cholangitis
/ Cholic acid
/ Clostridium - enzymology
/ Clostridium - genetics
/ Clostridium - metabolism
/ Clostridium difficile
/ Clostridium sporogenes
/ Deoxycholic acid
/ Deoxycholic Acid - chemistry
/ Deoxycholic Acid - metabolism
/ Digestive system
/ Enzymes
/ G protein-coupled receptors
/ Gastrointestinal Microbiome - genetics
/ Gastrointestinal Microbiome - physiology
/ Genes
/ Gut microbiota
/ Humanities and Social Sciences
/ Hydroxylation
/ Hydroxylation - genetics
/ Identification and classification
/ Influence
/ Intestinal microflora
/ Life cycle engineering
/ Lithocholic Acid - chemistry
/ Lithocholic Acid - metabolism
/ Liver cancer
/ Male
/ Metabolic Engineering
/ Metabolic Networks and Pathways - genetics
/ Metabolic pathways
/ Metabolism
/ Metabolites
/ Mice
/ Microbiomes
/ Microbiota
/ Microbiota (Symbiotic organisms)
/ Microorganisms
/ multidisciplinary
/ Operon - genetics
/ Physiology
/ Protein turnover
/ Science
/ Science (multidisciplinary)
/ Steroids
/ Symbiosis
2020
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A metabolic pathway for bile acid dehydroxylation by the gut microbiome
by
Almo, Steven C.
, McFadden, Molly E.
, Varma, Yug
, Guo, Chunjun
, Wang, Min
, Brown, Laura C.
, Fischbach, Michael A.
, Grove, Tyler L.
, Higginbottom, Steven
, Funabashi, Masanori
in
631/326
/ 631/45
/ 82
/ 82/16
/ 82/83
/ Analysis
/ Animals
/ Bile
/ Bile acid metabolism
/ Bile acids
/ Bile Acids and Salts - chemistry
/ Bile Acids and Salts - metabolism
/ Chemical synthesis
/ Cholangitis
/ Cholic acid
/ Clostridium - enzymology
/ Clostridium - genetics
/ Clostridium - metabolism
/ Clostridium difficile
/ Clostridium sporogenes
/ Deoxycholic acid
/ Deoxycholic Acid - chemistry
/ Deoxycholic Acid - metabolism
/ Digestive system
/ Enzymes
/ G protein-coupled receptors
/ Gastrointestinal Microbiome - genetics
/ Gastrointestinal Microbiome - physiology
/ Genes
/ Gut microbiota
/ Humanities and Social Sciences
/ Hydroxylation
/ Hydroxylation - genetics
/ Identification and classification
/ Influence
/ Intestinal microflora
/ Life cycle engineering
/ Lithocholic Acid - chemistry
/ Lithocholic Acid - metabolism
/ Liver cancer
/ Male
/ Metabolic Engineering
/ Metabolic Networks and Pathways - genetics
/ Metabolic pathways
/ Metabolism
/ Metabolites
/ Mice
/ Microbiomes
/ Microbiota
/ Microbiota (Symbiotic organisms)
/ Microorganisms
/ multidisciplinary
/ Operon - genetics
/ Physiology
/ Protein turnover
/ Science
/ Science (multidisciplinary)
/ Steroids
/ Symbiosis
2020
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A metabolic pathway for bile acid dehydroxylation by the gut microbiome
by
Almo, Steven C.
, McFadden, Molly E.
, Varma, Yug
, Guo, Chunjun
, Wang, Min
, Brown, Laura C.
, Fischbach, Michael A.
, Grove, Tyler L.
, Higginbottom, Steven
, Funabashi, Masanori
in
631/326
/ 631/45
/ 82
/ 82/16
/ 82/83
/ Analysis
/ Animals
/ Bile
/ Bile acid metabolism
/ Bile acids
/ Bile Acids and Salts - chemistry
/ Bile Acids and Salts - metabolism
/ Chemical synthesis
/ Cholangitis
/ Cholic acid
/ Clostridium - enzymology
/ Clostridium - genetics
/ Clostridium - metabolism
/ Clostridium difficile
/ Clostridium sporogenes
/ Deoxycholic acid
/ Deoxycholic Acid - chemistry
/ Deoxycholic Acid - metabolism
/ Digestive system
/ Enzymes
/ G protein-coupled receptors
/ Gastrointestinal Microbiome - genetics
/ Gastrointestinal Microbiome - physiology
/ Genes
/ Gut microbiota
/ Humanities and Social Sciences
/ Hydroxylation
/ Hydroxylation - genetics
/ Identification and classification
/ Influence
/ Intestinal microflora
/ Life cycle engineering
/ Lithocholic Acid - chemistry
/ Lithocholic Acid - metabolism
/ Liver cancer
/ Male
/ Metabolic Engineering
/ Metabolic Networks and Pathways - genetics
/ Metabolic pathways
/ Metabolism
/ Metabolites
/ Mice
/ Microbiomes
/ Microbiota
/ Microbiota (Symbiotic organisms)
/ Microorganisms
/ multidisciplinary
/ Operon - genetics
/ Physiology
/ Protein turnover
/ Science
/ Science (multidisciplinary)
/ Steroids
/ Symbiosis
2020
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A metabolic pathway for bile acid dehydroxylation by the gut microbiome
Journal Article
A metabolic pathway for bile acid dehydroxylation by the gut microbiome
2020
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Overview
The gut microbiota synthesize hundreds of molecules, many of which influence host physiology. Among the most abundant metabolites are the secondary bile acids deoxycholic acid (DCA) and lithocholic acid (LCA), which accumulate at concentrations of around 500 μM and are known to block the growth of
Clostridium difficile
1
, promote hepatocellular carcinoma
2
and modulate host metabolism via the G-protein-coupled receptor TGR5 (ref.
3
). More broadly, DCA, LCA and their derivatives are major components of the recirculating pool of bile acids
4
; the size and composition of this pool are a target of therapies for primary biliary cholangitis and nonalcoholic steatohepatitis. Nonetheless, despite the clear impact of DCA and LCA on host physiology, an incomplete knowledge of their biosynthetic genes and a lack of genetic tools to enable modification of their native microbial producers limit our ability to modulate secondary bile acid levels in the host. Here we complete the pathway to DCA and LCA by assigning and characterizing enzymes for each of the steps in its reductive arm, revealing a strategy in which the A–B rings of the steroid core are transiently converted into an electron acceptor for two reductive steps carried out by Fe–S flavoenzymes. Using anaerobic in vitro reconstitution, we establish that a set of six enzymes is necessary and sufficient for the eight-step conversion of cholic acid to DCA. We then engineer the pathway into
Clostridium sporogenes
, conferring production of DCA and LCA on a nonproducing commensal and demonstrating that a microbiome-derived pathway can be expressed and controlled heterologously. These data establish a complete pathway to two central components of the bile acid pool.
The biosynthetic pathway that produces the secondary bile acids DCA and LCA in human gut microbes has been fully characterized, engineered into another bacterial host, and used to confer DCA production in germ-free mice—an important proof-of-principle for the engineering of gut microbial pathways.
Publisher
Nature Publishing Group UK,Nature Publishing Group
Subject
/ 631/45
/ 82
/ 82/16
/ 82/83
/ Analysis
/ Animals
/ Bile
/ Bile Acids and Salts - chemistry
/ Bile Acids and Salts - metabolism
/ Deoxycholic Acid - chemistry
/ Deoxycholic Acid - metabolism
/ Enzymes
/ Gastrointestinal Microbiome - genetics
/ Gastrointestinal Microbiome - physiology
/ Genes
/ Humanities and Social Sciences
/ Identification and classification
/ Lithocholic Acid - chemistry
/ Lithocholic Acid - metabolism
/ Male
/ Metabolic Networks and Pathways - genetics
/ Mice
/ Microbiota (Symbiotic organisms)
/ Science
/ Steroids
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