Journal Article

Genome-wide association studies of brain imaging phenotypes in UK Biobank

Smith, Stephen M., Miller, Karla L., Sharp, Kevin, Shi, Sinan, Alfaro-Almagro, Fidel, Elliott, Lloyd T., Douaud, Gwenaëlle, Marchini, Jonathan

2018

Overview

The genetic architecture of brain structure and function is largely unknown. To investigate this, we carried out genome-wide association studies of 3,144 functional and structural brain imaging phenotypes from UK Biobank (discovery dataset 8,428 subjects). Here we show that many of these phenotypes are heritable. We identify 148 clusters of associations between single nucleotide polymorphisms and imaging phenotypes that replicate at P  < 0.05, when we would expect 21 to replicate by chance. Notable significant, interpretable associations include: iron transport and storage genes, related to magnetic susceptibility of subcortical brain tissue; extracellular matrix and epidermal growth factor genes, associated with white matter micro-structure and lesions; genes that regulate mid-line axon development, associated with organization of the pontine crossing tract; and overall 17 genes involved in development, pathway signalling and plasticity. Our results provide insights into the genetic architecture of the brain that are relevant to neurological and psychiatric disorders, brain development and ageing. Genome-wide association studies of brain imaging data from 8,428 individuals in UK Biobank show that many of the 3,144 traits studied are heritable, and genes associated with individual phenotypes are identified.

• Publisher: Nature Publishing Group UK,Nature Publishing Group
• Subject: 45/43 / 59 / 59/57 / 631/208/205/2138 / 631/208/480 / 631/378/2583 / Aging / Aging - genetics / Alzheimer's disease / Architecture / Automation / Axonogenesis / Behavior disorders / Biological Specimen Banks / Brain / Brain - anatomy & histology / Brain - diagnostic imaging / Brain - growth & development / Brain - pathology / Brain architecture / Brain research / Chromosomes / Consortia / Datasets as Topic / Developmental plasticity / Epidermal growth factor / Epidermal Growth Factor - genetics / Epidermal growth factors / Extracellular Matrix / Female / Functional anatomy / Gene loci / Genes / Genetic aspects / Genetic polymorphisms / Genome-Wide Association Study / Genomes / Genomics / Growth factors / Heredity / Humanities and Social Sciences / Humans / Imaging / Iron / Iron - metabolism / Iron transport / Lesions / Magnetic permeability / Magnetic susceptibility / Male / Medical imaging / Mental disorders / multidisciplinary / Neurodevelopmental disorders / Neuroimaging / Neurological diseases / Neuronal Plasticity - genetics / NMR / Nuclear magnetic resonance / Phenotype / Phenotypes / Polymorphism, Single Nucleotide - genetics / Putamen - anatomy & histology / Putamen - metabolism / Schizophrenia / Science / Science (multidisciplinary) / Signal transduction / Signal Transduction - genetics / Single nucleotide polymorphisms / Single-nucleotide polymorphism / Structure / Structure-function relationships / Substantia alba / United Kingdom / White Matter - anatomy & histology / White Matter - metabolism / White Matter - pathology