Journal Article

A transcriptional switch governs fibroblast activation in heart disease

Duan, Qiming, Lee, Clara Youngna, Padmanabhan, Arun, Sadagopan, Nandhini, Ye, Lin, Linares-Saldana, Ricardo, Silva, Ana Catarina, Rosenfeld, Michael G., Alexanian, Michael, Jain, Rajan, Andreoletti, Gaia, Srivastava, Deepak, Pollard, Katherine S., Travers, Joshua G., Haldar, Saptarsi M., Li, Li, Przytycki, Pawel F., Huang, Yu, McKinsey, Timothy A., Micheletti, Rudi, Gonzalez-Teran, Barbara, Ranade, Sanjeev S., Felix, Franco, Gifford, Casey A., Pelonero, Angelo

2021

Overview

In diseased organs, stress-activated signalling cascades alter chromatin, thereby triggering maladaptive cell state transitions. Fibroblast activation is a common stress response in tissues that worsens lung, liver, kidney and heart disease, yet its mechanistic basis remains unclear 1 , 2 . Pharmacological inhibition of bromodomain and extra-terminal domain (BET) proteins alleviates cardiac dysfunction 3 – 7 , providing a tool to interrogate and modulate cardiac cell states as a potential therapeutic approach. Here we use single-cell epigenomic analyses of hearts dynamically exposed to BET inhibitors to reveal a reversible transcriptional switch that underlies the activation of fibroblasts. Resident cardiac fibroblasts demonstrated robust toggling between the quiescent and activated state in a manner directly correlating with BET inhibitor exposure and cardiac function. Single-cell chromatin accessibility revealed previously undescribed DNA elements, the accessibility of which dynamically correlated with cardiac performance. Among the most dynamic elements was an enhancer that regulated the transcription factor MEOX1, which was specifically expressed in activated fibroblasts, occupied putative regulatory elements of a broad fibrotic gene program and was required for TGFβ-induced fibroblast activation. Selective CRISPR inhibition of the single most dynamic cis -element within the enhancer blocked TGFβ-induced Meox1 activation. We identify MEOX1 as a central regulator of fibroblast activation associated with cardiac dysfunction and demonstrate its upregulation after activation of human lung, liver and kidney fibroblasts. The plasticity and specificity of BET-dependent regulation of MEOX1 in tissue fibroblasts provide previously unknown trans - and cis -targets for treating fibrotic disease. BET proteins regulate a reversible transcriptional switch that governs fibroblast activation in heart disease through the transcription factor MEOX1.

• Publisher: Nature Publishing Group UK,Nature Publishing Group
• Subject: 13 / 13/1 / 13/106 / 13/109 / 13/89 / 14/1 / 38/109 / 38/39 / 38/89 / 38/90 / 38/91 / 45/15 / 45/90 / 45/91 / 631/208 / 631/337 / 64/60 / Accessibility / Animals / Cardiomyocytes / Cardiovascular disease / Cardiovascular diseases / Cell activation / Cellular stress response / Chromatin / Chromatin - metabolism / Coronary artery disease / CRISPR / Deoxyribonucleic acid / Development and progression / DNA / Enhancer Elements, Genetic / Epigenomics / Fibroblasts / Fibroblasts - cytology / Fibrosis / Gene expression / Gene Expression Regulation / Genetic aspects / Genetic regulation / Genetic transcription / Genomics / Health aspects / Heart diseases / Heart Diseases - genetics / Heart failure / Homeodomain Proteins - metabolism / Humanities and Social Sciences / Humans / Kidneys / Liver / Liver diseases / Lungs / Mice / multidisciplinary / Pathogenesis / Proteins / Proteins - antagonists & inhibitors / Regulatory sequences / RNA polymerase / Science / Science (multidisciplinary) / Single-Cell Analysis / Transcription Factors - metabolism / Transcriptome / Transforming Growth Factor beta - metabolism